Hi, I have successfully performed WGCNA. I have also visualized the whole network using igraph. Now I want to visualize one specific module and highlight sig. DE genes that are assigned to the module. How can I do that?
You can export the network modules to text files using exportNetworkToCytoscape function in WGCNA (each module will be saved separately). Then import the file to Cytoscape and visualize each module and highlight the genes as you want.
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