Dear all,
PROBLEM: I am having some problems doing a phylogenetic analysis for a study. Basically, I have a pool of around 1200 protein sequences from hemagglutinin (influenza virus), and I would like to sort them according to their subtype group (so according to their sequence similarity), for further study their sequence differences within the groups. However, I do not find any software that is helping me with that, for now, I have tried MegaX, and is not helping.
QUESTION: Does anyone know of any software or method to do that? Any recommendations/suggestions are very much appreciated! :)
Thank you very much.
CD-HIT