Hi all, In a spreadsheet i have my list of rs# with their chromosomal number and locations. I want to generate a BED file for these variants. I wanted to know if the start and end coordinates should be the same or should they be offset by 1.
For e.g. Chr1:1000,1000 or Chr1:1000,1001 or Chr1:999,1000
where 1000 is the chromosomal coordinate for that rs#.
the BED file will be used as an input region file to query a VCF file using tabix.
thanks in advance. a