Forum:Tools to check if the user defined pathway is enriched in the data
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4 weeks ago
Aynur ▴ 40

Dear Biostars,

I am doing RNA-Seq analysis of mouse cells. I have identified DEGs using DESeq2 and did gene set enrichment analysis using fgsea package.

Here I want to check if a user defined pathway(my favorite genes to be correct) is enriched in my treatment samples. Can you please advise me any tools to perform this ? I did quite a bit of searching, but could not find one yet.

I greatly appreciate your kind help.

Regards, Aynur.

RNA-Seq R sequencing Forum • 103 views
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