How to create Gene Ontology (GO) pie-chart/bar-chart from the eggNOG-mapper output tsv/xls file?
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6 months ago
Kumar ▴ 50

I have completed functional annotation of my bacterial proteome fasta file using eggNOG-mapper. But, I do not know, how to process the eggNOGmapper generated output file in a meaningful way (Its a bit confusing like each gene/contig consist many GO ids and many other parameters). I mean, how to make pie-chart or bar-chart consist the percentage of each each functional categories from the output file. Please help me in this cause. The expected outcome pie-chart shown below

pie-chart

Thanks in advance.

genome python python3 R shell • 431 views
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Please post some example data and if possible, a reference image of expected output. I am aware of TSV/xls format and please do not share links to tsv format or xls format.

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Dear cpad0112 , sorry for the delayed response. As you mentioned I have updated my question. Please help me in this cause.

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