For context, I am a university student who is very much new to using Cytoscape, so I am learning how to use the software. The data I have lists the potential binding partners of a protein in two different conditions. I have developed some basic networks but I am wondering the best possible way to compare the different PPI networks together if that is even possible using Cytoscape? I am out of my depth slightly with regards to this, so any help would be much appreciated.
Thanks in advance