Entering edit mode
3.1 years ago
wei.zhang
•
0
Hi all, I am new to Diffbind, when I used it to ran my ChIP-seq data, I got below result. From the dba.report if my understanding is correct Fold=Conc_GNP1-Conc_GNP2, but for my data is obviously not, anyone can help me with this? Thanks a lot!
result<-dba.report(Epigenome2,th=1)
result
GRanges object with 59140 ranges and 6 metadata columns:
seqnames ranges strand | Conc Conc_GNP1 Conc_GNP2 Fold p-value FDR
<Rle> <IRanges> <Rle> | <numeric> <numeric> <numeric> <numeric> <numeric> <numeric>
chr20 16984425-16985425 * | 5.53053 5.85727 5.10743 0.00212363 0.000522680 0.999946
Thanks a lot Rory!!!