How maftools oncoplot deal with Splice_Site mutation
0
0
Entering edit mode
8 months ago

I've got a sequencing output dataframe. The summary of the variant classification is listed below

            3'UTR           5'Flank             5'UTR   Frame_Shift_Del 
              250                13               133               487 
  Frame_Shift_Ins               IGR      In_Frame_Del      In_Frame_Ins 
              354                 1               651                92 
           Intron Missense_Mutation Nonsense_Mutation  Nonstop_Mutation 
             8793              6385               517                 2 
              RNA            Silent       Splice_Site           Unknown 
              278              3062               225               181

I created a oncoplot based on this maf file and the output oncoplot presented the variant classification of Frame_Shift_Del, Frame_Shift_Ins, In_Frame_Del, In_Frame_Ins, Missense_Mutation, Nonsense_Mutation, and Splice_Site. But I found that most literature present the oncoplot only with Missense, Truncating, and InDel. So I just want to know if these literatures reclassified the Splice_Site mutation into Missense, Truncating, or InDel?

maftools oncoplot SNV Splicing • 367 views
ADD COMMENT

Login before adding your answer.

Traffic: 1946 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6