I've got a sequencing output dataframe. The summary of the variant classification is listed below
3'UTR 5'Flank 5'UTR Frame_Shift_Del 250 13 133 487 Frame_Shift_Ins IGR In_Frame_Del In_Frame_Ins 354 1 651 92 Intron Missense_Mutation Nonsense_Mutation Nonstop_Mutation 8793 6385 517 2 RNA Silent Splice_Site Unknown 278 3062 225 181
I created a oncoplot based on this maf file and the output oncoplot presented the variant classification of Frame_Shift_Del, Frame_Shift_Ins, In_Frame_Del, In_Frame_Ins, Missense_Mutation, Nonsense_Mutation, and Splice_Site. But I found that most literature present the oncoplot only with Missense, Truncating, and InDel. So I just want to know if these literatures reclassified the Splice_Site mutation into Missense, Truncating, or InDel?