How to make paired-end sequencing multi-mapping reads have only the optimal two reads
0
0
Entering edit mode
7 months ago

l'm a starter,and I want to use a python script, but it can only identify matching reads,so how to filter out the multi-map read so that only the optimal unique mapping is retained?

thank you for your reply.

RNA-Seq alignment sequencing • 319 views
ADD COMMENT
0
Entering edit mode

Hi,

Are you thinking about Generating consensus sequence from bam file?

ADD REPLY
0
Entering edit mode

Thanks for your answer.

But I don’t mean it, I mean how to keep only the optimal solution in the multi-map read?

ADD REPLY

Login before adding your answer.

Traffic: 2758 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6