Now, I have one hundred rnaseq samples data, but this data is not strand specific. I did the differential gene expression and can I use this data to annotate gene structure of genome? or what can I do by the rnaseq? my data like below:
control1 case1(three replicates) control2 case2(three replicates) control3 case3(three replicates) . . .
I have many cases and corresponding controls .How can i use these data do WGCNA?
Thank you very much