Hi, I wonder is program for simulate a gwa case/control data with LD pattern intact ( I want to use LD pattern from CEU hapmap). I want to simulate genotype for illumina/affymetrix chip.
From what I googling, I found gwasimulator (http://biostat.mc.vanderbilt.edu/wiki/Main/GWAsimulator) and plink. Are these two ok for a jobs ? Or there's any better alternative ?