Question: Vcf To Gff Format
0
gravatar for jackuser1979
6.6 years ago by
jackuser1979860
US
jackuser1979860 wrote:

I have varscan output in vcf format. I need to convert to gff format. Does any one know any tool or script to convert from varscan vcf to gff format?

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ADD COMMENTlink written 6.6 years ago by jackuser1979860
1
gravatar for Whetting
6.6 years ago by
Whetting1.5k
Bethesda, MD
Whetting1.5k wrote:

check here

http://seqanswers.com/forums/showthread.php?t=9796&highlight=gff+vcf</a<>>

ADD COMMENTlink written 6.6 years ago by Whetting1.5k
1
gravatar for raunakms
6.6 years ago by
raunakms990
Vancouver, BC, Canada
raunakms990 wrote:

well if you know the column annotation of both VCF and GFF format than it would be better to write your own perl script to convert one from the other !!!

ADD COMMENTlink modified 6.6 years ago • written 6.6 years ago by raunakms990
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