Illumina Zhonghua Chip Two Snp The Same Position
1
0
Entering edit mode
10.0 years ago
Liyf ▴ 30

I am very confused about illumina Zhonghua, why different SNPs have the same chrosome position, take one for example, rs28456011 and kgp4449990, both chr1:1567206(hg19)???

snp position • 2.1k views
ADD COMMENT
0
Entering edit mode

When you contacted Illumina, what did they say, just out of curiosity?

ADD REPLY
0
Entering edit mode

I just contacted illumina, and not get reply. I am waiting.

ADD REPLY
1
Entering edit mode
10.0 years ago
JC 13k

One simple explanation (besides duplicate entries with different IDs) is they represent an unique variation at the same position, chr1:1567206 in the reference is a G, the rs28456011 is reported as A, maybe kgp4449990 is a T or C (I didn't find the genotype).

ADD COMMENT
0
Entering edit mode

Thank you!I am still confused about this, I think may be you are right. In fact, I felt that if I use all the SNPs, I will not miss any important SNPs

ADD REPLY

Login before adding your answer.

Traffic: 1119 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6