Comparing Cdna Sequence From Different Species
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11.9 years ago
jackuser1979 ▴ 890

I have insect species transcriptome assembly and I have annotated this transcriptome assembly to close insect species Ensembl cDNA sequence. I have set of annotated transcript ids. Now I want to compare this set of annotated transcript ids to other species cDNA sequence. How can I do that?

cDNA • 2.4k views
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11.9 years ago
JC 13k

Maybe you can use the Ensembl Compara API: http://uswest.ensembl.org/info/docs/api/compara/compara_tutorial.html

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