Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Predicting Recombination From Snp Data In Trio Families
0
gravatar for Darren J. Fitzpatrick
8.3 years ago by
Darren J. Fitzpatrick • 1.1k
Ireland/ United Kingdom
Darren J. Fitzpatrick • 1.1k wrote:

Hi,

Does anyone know of the existence of software that allows one to predict the occurrence of recombination events in trio families from SNP data?

By the above, I mean, given SNP data from both parents, is it possible to predict the occurence of a recombination event in the child based on his/her genotypes.

Any help greatly appreciated!

Darren.
software recombination snp • 2.0k views
ADD COMMENT • link •
modified 8.3 years ago by JC ♦ 12k • written 8.3 years ago by Darren J. Fitzpatrick • 1.1k
4
gravatar for Matt Shirley
8.3 years ago by
Matt Shirley ♦ 9.4k
Cambridge, MA
Matt Shirley ♦ 9.4k wrote:

Our lab has a web tool (pediSNP) that meets your needs. Here is the publication. You can upload your data, and the analysis takes a few minutes.

ADD COMMENT • link written 8.3 years ago by Matt Shirley ♦ 9.4k

Yep - just emailed your PI regarding the code for SNPTrio.

ADD REPLY • link written 8.3 years ago by Darren J. Fitzpatrick • 1.1k
1
gravatar for JC
8.3 years ago by
JC ♦ 12k
Mexico
JC ♦ 12k wrote:

Did you check http://www.ncbi.nlm.nih.gov/pubmed/17219374 ?
ADD COMMENT • link written 8.3 years ago by JC ♦ 12k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1474 users visited in the last hour