Question

Predicting Recombination From Snp Data In Trio Families

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11.7 years ago

Darren J. Fitzpatrick ★ 1.1k

Hi,

Does anyone know of the existence of software that allows one to predict the occurrence of recombination events in trio families from SNP data?

By the above, I mean, given SNP data from both parents, is it possible to predict the occurence of a recombination event in the child based on his/her genotypes.

Any help greatly appreciated!

Darren.

snp recombination software • 2.7k views

ADD COMMENT • link updated 11.7 years ago by JC 13k • written 11.7 years ago by Darren J. Fitzpatrick ★ 1.1k

score 4 · Answer 1 · 2012-08-30

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11.7 years ago

Matt Shirley 10k

Our lab has a web tool (pediSNP) that meets your needs. Here is the publication. You can upload your data, and the analysis takes a few minutes.

ADD COMMENT • link 11.7 years ago by Matt Shirley 10k

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Yep - just emailed your PI regarding the code for SNPTrio.

ADD REPLY • link 11.7 years ago by Darren J. Fitzpatrick ★ 1.1k

score 1 · Answer 2 · 2012-08-30

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11.7 years ago

JC 13k

Did you check http://www.ncbi.nlm.nih.gov/pubmed/17219374 ?

ADD COMMENT • link 11.7 years ago by JC 13k