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Question: Predicting Recombination From Snp Data In Trio Families
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gravatar for Darren J. Fitzpatrick
7.8 years ago by
Darren J. Fitzpatrick • 1.1k
Ireland/ United Kingdom
Darren J. Fitzpatrick • 1.1k wrote:

Hi,

Does anyone know of the existence of software that allows one to predict the occurrence of recombination events in trio families from SNP data?

By the above, I mean, given SNP data from both parents, is it possible to predict the occurence of a recombination event in the child based on his/her genotypes.

Any help greatly appreciated!

Darren.
software recombination snp • 2.0k views
ADD COMMENT • link •
modified 7.8 years ago by JC ♦ 10k • written 7.8 years ago by Darren J. Fitzpatrick • 1.1k
4
gravatar for Matt Shirley
7.8 years ago by
Matt Shirley ♦ 9.3k
Cambridge, MA
Matt Shirley ♦ 9.3k wrote:

Our lab has a web tool (pediSNP) that meets your needs. Here is the publication. You can upload your data, and the analysis takes a few minutes.

ADD COMMENT • link written 7.8 years ago by Matt Shirley ♦ 9.3k

Yep - just emailed your PI regarding the code for SNPTrio.

ADD REPLY • link written 7.8 years ago by Darren J. Fitzpatrick • 1.1k
1
gravatar for JC
7.8 years ago by
JC ♦ 10k
Mexico
JC ♦ 10k wrote:

Did you check http://www.ncbi.nlm.nih.gov/pubmed/17219374 ?
ADD COMMENT • link written 7.8 years ago by JC ♦ 10k
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