Tutorial:Rna-Seq Review Papers
3
69
3
Entering edit mode

Here is a review/educational paper "Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud" that accompanies an extensive hands-on tutorial at rnaseq.wiki. It covers many aspects of RNA-seq and includes primers on related fundamentals that you will need including Unix, R, Genome Browsers, using cloud computing, etc.

ADD REPLY
1
5
Entering edit mode
12.1 years ago
NextGenSeek ▴ 290

Here is more.

RNA-Seq: a revolutionary tool for transcriptomics. Zhong Wang, Mark Gerstein & Michael Snyder, Nature Reviews Genetics 10, 57-63 (January 2009)

Next-generation transcriptome assembly. Jeffrey A. Martin & Zhong Wang Nature Reviews Genetics 12, 671-682 (October 2011)

RNA sequencing: advances, challenges and opportunities Fatih Ozsolak & Patrice M. Milos, Nature Reviews Genetics 12, 87-98 (February 2011)

RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing Brian T. Wilhelma and Josette-Renée Landryb, Methods Volume 48, Issue 3, July 2009, Pages 249–257

ADD COMMENT
0
Entering edit mode

I am going to add the checkmark to any post that is merged into the toplevel one

ADD REPLY
1
Entering edit mode
12.1 years ago
NextGenSeek ▴ 290

Models for transcript quantification from RNA-Seq, Lior Pachter, preprint arXiv 2012

Computation for ChIP-seq and RNA-seq studies. Pepke, Shirley; Wold, Barbara; Mortazavi, Ali, Nature methods. 2009 6(11 Suppl):S22-32

ADD COMMENT
1
Entering edit mode
12.0 years ago

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA‐seq experiments

Molecular Ecology

Nagarjun Vijay Jelmer W. Poelstra Axel Künstner Jochen B. W. Wolf

RNA-Seq Assembly – Are We There Yet?

Simon Schliesky,1 Udo Gowik,2 Andreas P. M. Weber,1 and Andrea Bräutigam1,*

ADD COMMENT

Login before adding your answer.

Traffic: 1712 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6