Question: Illumina Sentrix Beads Arrays
0
gravatar for Assa Yeroslaviz
6.3 years ago by
Assa Yeroslaviz1.1k
Munich
Assa Yeroslaviz1.1k wrote:

Hi everyone,

I was wondering if anyone has ever analyze the sentrix beads arrays from Illumina.

Is there an open source software/ R package to work with this kind of arrays?

Where can I find some more information about these arrays?

Thanks

Assa

illumina • 1.7k views
ADD COMMENTlink modified 3.5 years ago by Chris Evelo9.9k • written 6.3 years ago by Assa Yeroslaviz1.1k

"from affymetrix"? Think you mean from Illumina.

ADD REPLYlink written 6.3 years ago by Neilfws48k

you're right. I have changed it

ADD REPLYlink written 6.3 years ago by Assa Yeroslaviz1.1k
2
gravatar for Simon Cockell
6.3 years ago by
Simon Cockell7.3k
Newcastle
Simon Cockell7.3k wrote:

You'll want to check out the Bioconductor lumi package, which provides methods for reading Illumina array data, QC and normalisation.

I'm sure Illumina will provide you with all the technical documentation you'd need for the specific arrays you'll be working with (eg this pdf).

ADD COMMENTlink written 6.3 years ago by Simon Cockell7.3k

thanks Simon,

I have seen the lumi package, but I wasn't sure, if the beads arrays are the same as the sentrix arrays. After looking into the presentation they saved on the site. i figure out, they are the same :-)

ADD REPLYlink written 6.3 years ago by Assa Yeroslaviz1.1k
0
gravatar for Chris Evelo
3.5 years ago by
Chris Evelo9.9k
Maastricht, The Netherlands
Chris Evelo9.9k wrote:

We have combined different Bioconductor packages for QC, normalisation, statistics of Illumina bead arrays with a pathway analysis approach in PathVisio using RPC access to that. That pipeline now is part of arrayanalysis.org. We recently described it in this paper.

ADD COMMENTlink written 3.5 years ago by Chris Evelo9.9k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1166 users visited in the last hour