Hi All,
Just few quick questions about Codeml.
Can we study lineage-specific selection only on sequences that are single copy orthologs (or in simple words just have 1-1 relations). What should I do in case of multigene families? Does codeml works well in case of multi gene families? Do I have to extract 1-1 relations from these families and then input to codeml or the whole family can go as input?
Thanks, RT