I am using the vcftools to extract data from a VCF file into tabular form, so that I can read into R and do some computations and visualisation
vcftools --vcf sample1.vcf --get-INFO MQ --get-INFO MQ0
The file it creates is always called out.INFO. Is there really no way of controlling the name of the output file to something like sample1.INFO? If I want to extract info from several vcfs in the same directory, they will overwrite each other.