Entering edit mode
12.1 years ago
jackuser1979
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890
I have RNAseq illumina paired reads mapped to reference genome using bowtie and samtools. I have both bam file and mpileup file. Are there any tools to calculate average number of reads and average number of base pairs for each contig/chromosome?
do you mean number of reads per region of interest? please do edit your question to be more clear