I have mapped RNA-seq illumina paired-end reads to reference genome contigs(which is assembled contigs/scaffolds). I have VCF file called from variant caller, which consists of contigs (not by chromosome name). I tried running snpEff to human -GRCH37.64 which gives annotated gene list but not effect prediction.How can we use snpEff for contigs for variant annotation and effect prediction?.
Question: Snp-Annotation And Effect Prediction
8.4 years ago by
jackuser1979 • 880
jackuser1979 • 880 wrote:
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