How To Do Pathway Analysis For Bacteria With David Or Other Tools
2
1
Entering edit mode
12.1 years ago
ana.l.wang ▴ 50

I'm trying to do some pathway analysis of some of mass spec data of bacterial proteins. Is there some way to analyze a large list of them all at once? I have been playing with DAVID today, but it does not recognize what I am plugging in. I am plugging in locus IDs (ex: ZP_06090800.1), but DAVID does not recognize this format... I've tried almost all of the options in the drop-down menu, and none of them are working. I also can't figure out a way to go from the locus information to an actual gene name. Any ideas of other sites I can use to do this?

kegg bacteria • 5.7k views
ADD COMMENT
0
Entering edit mode

Have you had a look at PathVisio? I am not sure if enough bacteria pathways are in WikiPathways, but you can check... If not mistaken, you can also load the KEGG pathways...

ADD REPLY
0
Entering edit mode
12.1 years ago
ana.l.wang ▴ 50

I'll give it a try. Where do I download the KEGG pathways?

ADD COMMENT
0
Entering edit mode

Check on this page: http://www.wikipathways.org/index.php/Download_Pathways I have not done this myself yet, so if it does not work, please ask on the mailing list: http://www.wikipathways.org/index.php/Contact_Us

ADD REPLY
0
Entering edit mode
3.8 years ago
mail2smn07 • 0

Please try ShinyGO.net

ADD COMMENT

Login before adding your answer.

Traffic: 705 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6