Bacterial Genomes To Download
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11.5 years ago
Lukas Pravda ▴ 80

Hi guys,

I wonder if there're any up-to date publicly available genomes of bacteria, I could use as an input for Blast/Blat (fasta/2bit format) search. If so, would you send me links? I'm aware of database '16S ribosomal RNA sequences (Bacteria and Archaea)', however it's coverage is rather low. I appreciate your experiences.

EDIT: thank you guys, you've helped me a lot. It's a shame, that as an answer just one can be picked :)

genome bacteria fasta • 3.1k views
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11.5 years ago
Fedor Gusev ▴ 210

You can get a lot from Human Microbiome Project.

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11.5 years ago
Torst ▴ 980

I have a good blog post on this topic:

http://thegenomefactory.blogspot.com.au/2012/07/navigating-microbial-genomes-on-ncbi.html

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Oh nice! I am now an official fan of your blog!

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11.5 years ago
JC 13k

You can get a bunch of genomes from http://www.ncbi.nlm.nih.gov/genomes/MICROBES/microbial_taxtree.html

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7.0 years ago
craig ▴ 50

Repositive has a FREE collection of 21,300 Microbiome datasets from 7 different data sources

Get a sneak preview of the Microbiome data on Repositive here: https://discover.repositive.io/datasets/search?query=Microbiome

Browse the FREE Repositive Microbiome data collection here (free account required): https://discover.repositive.io/collections/9c42af0e-85b8-4b7e-80ed-355564a4eff1

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It appears that you are a representative from repositive and want to advertise your platform. You should do so as a separate post under "tools" (listing all types of data available) rather than posting in older threads.

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