Question

What Does Fastqrd1 And Fastqrd2 Mean In Single-Ended Rna-Seq?

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11.5 years ago

Hanfei Sun ▴ 60

The data is from here:

http://encodeproject.org/cgi-bin/hgFileSearch?hgsid=304378767&db=hg19&hgt_tsDelRow=&hgt_tsAddRow=&tsName=&tsDescr=&tsGroup=Any&fsFileType=Any&hgt_mdbVar1=dataType&hgt_mdbVal1=RnaSeq&hgt_mdbVar2=antibody&hgt_mdbVal2=Any&hgfs_Search=search

(search Rd1 in the result page)

Anyone has ideas about that? Thanks!

rna-seq next-gen • 1.8k views

ADD COMMENT • link updated 11.5 years ago by matted 7.8k • written 11.5 years ago by Hanfei Sun ▴ 60

score 1 · Answer 1 · 2012-10-16

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11.5 years ago

matted 7.8k

Why do you think they are single-ended? A lot of these experiments are paired-end, including all the ones I see with FastqRd2. The read length says 2x75 or 2x76, denoting paired-end reads.

ADD COMMENT • link 11.5 years ago by matted 7.8k

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@matted I see thanks!

ADD REPLY • link 11.5 years ago by Hanfei Sun ▴ 60