Question: How Do I Download Homodimers And Heterodimers?
gravatar for charlesskaria
6.9 years ago by
charlesskaria0 wrote:


Is it possible to download homo and heterodimers from PDBe PISA.? Are there any other databases available to perfom this task?

protein • 1.1k views
ADD COMMENTlink modified 6.9 years ago by Khader Shameer18k • written 6.9 years ago by charlesskaria0
gravatar for Khader Shameer
6.9 years ago by
Manhattan, NY
Khader Shameer18k wrote:

Yes, you can download them via PDBe.

For example: for a PDB ID 1DDT, You can see the entry page here . You can see the quaternary assembly (in this case this is a homo dimer) information here. You can download the PDB coordinates from Downloads page here . Quaternary assemblies (homodimer) structure can be downloaded here: for different PDB IDs you can either loop through identifiers using a shell script with wget or do some targeted data retrieval using modules like Mechanize

ADD COMMENTlink written 6.9 years ago by Khader Shameer18k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2274 users visited in the last hour