Question: How Do I Download Homodimers And Heterodimers?
0
gravatar for charlesskaria
6.9 years ago by
charlesskaria0 wrote:

Hi,

Is it possible to download homo and heterodimers from PDBe PISA.? Are there any other databases available to perfom this task?

protein • 1.1k views
ADD COMMENTlink modified 6.9 years ago by Khader Shameer18k • written 6.9 years ago by charlesskaria0
0
gravatar for Khader Shameer
6.9 years ago by
Manhattan, NY
Khader Shameer18k wrote:

Yes, you can download them via PDBe.

For example: for a PDB ID 1DDT, You can see the entry page here . You can see the quaternary assembly (in this case this is a homo dimer) information here. You can download the PDB coordinates from Downloads page here . Quaternary assemblies (homodimer) structure can be downloaded here:

http://www.ebi.ac.uk/pdbe-srv/view/files/1ddt_1.mmol for different PDB IDs you can either loop through identifiers using a shell script with wget or do some targeted data retrieval using modules like Mechanize

ADD COMMENTlink written 6.9 years ago by Khader Shameer18k
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