Question: Calculating Ibd Using R Package
1
gravatar for Hypotheses
6.5 years ago by
Hypotheses70
Bangkok, Thailand
Hypotheses70 wrote:

Hi all,

Does anyone know whether there is any R package or function to calculate IBD (identity by descent) sharing? I have been trying to search for a solution in Biostar, google, etc, but haven't really found anything.

I know that other software such as SOLAR, MERLIN, GENIBD, SIMWALK etc can calculate IBD. I am doing some simulation in R and since my simulated genotype is already in R, I would like to find a way to calculate IBD sharing within R itself.

Can anyone help point me to the right direction?

Thank you very much.

Bhoom

R genetics • 2.7k views
ADD COMMENTlink modified 5.6 years ago by Biostar ♦♦ 20 • written 6.5 years ago by Hypotheses70
5
gravatar for Joey
6.5 years ago by
Joey410
Seattle
Joey410 wrote:

You can use the SNPRelate package for that (http://cran.r-project.org/web/packages/SNPRelate/index.html).

-Joey

ADD COMMENTlink modified 6.5 years ago by Obi Griffith17k • written 6.5 years ago by Joey410

Thank you. I will check it out. I didn't realize that you have already answered my answer quite some time ago. I really need to figure out how to get notified from this forum.

ADD REPLYlink written 6.2 years ago by Hypotheses70
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