Question: Transcript Specific Expression Data
gravatar for disco
7.1 years ago by
disco30 wrote:

Hello dear bio-informats,

I am looking for a database which would help me find transcript specific RNA expression of a gene, quantitatively. I have tried UCSC, but I wasn't really successful. I have two alternative transcripts for two different genes for which I need to know the tissue specific expression. I'm expecting a differential expression compared to the other transcripts, which I would also need to see quantitatively. Could someone please suggest or advice on this situation?

Many thanks!

rna-seq • 1.8k views
ADD COMMENTlink modified 5.7 years ago by vj410 • written 7.1 years ago by disco30

Which organism are you studying? There are a few expression databases out there so it would help to know which direction to guide you.

ADD REPLYlink written 7.1 years ago by Josh Herr5.7k

Hi! I'm sorry, I'm just seeing your response. I'm working on human genome. Actually, I have uploaded a new post. If you could please (and if it is not too much trouble) take a look and try to respond.. It would be extremely helpful because I feel like I'm stuck with this for sometime now..

ADD REPLYlink written 6.9 years ago by disco30
gravatar for vj
5.7 years ago by
vj410 wrote:

Hi you can look at the freely available encode expression data here. Transcript-level expression from RNA-Seq data for many cell lines they work on are provided in easily parsable gff files.

ADD COMMENTlink written 5.7 years ago by vj410
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