Help: Repeatmodeler With Ncbi Engine Error Message

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11.5 years ago

xuehua.wan • 0

When running RepeatModeler 1.0.5 with ncbi rmblast, I got the following message that seq== 2810RepeatModeler::sampleFromDB() Could not obtain sequence ( entry = 1-0-5, start = 0 end = 2809 ) from the database!.

It seems that the error occurs at line 1783 of the repeatmodeler : "::sampleFromDB() Could not obtain sequence ( entry = $1, . "start = $openCoordStart end = $openCoordEnd ) from", and the program is looking for gi number in some database and die. I cannot figure out how to solve this problem.

Anyone has experience with this and can give any suggestions? Thank you very much !

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ADD COMMENT • link updated 10.2 years ago by Biostar 20 • written 11.5 years ago by xuehua.wan • 0

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please report the bug: http://repeatmasker.org/cgi-bin/form2mail?template=feedback.tmpl&title=Feedback%20Form

ADD REPLY • link 11.5 years ago by JC 13k

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