Question: How To Translate Old Parameters In New Version Of Blast 2.2.27 +
1
gravatar for konstantinkul
7.1 years ago by
Russian Federation
konstantinkul90 wrote:

Hi, I am a beginner in blast. I can't figure out how to write options for the new version of blasts. I read manuals, but it confused me more.

How to translate this options for new version of blast

-F "m S"
-F "m D"
-F "m C"

and

-f  for blastx

I would be grateful for any advice.

blast • 1.7k views
ADD COMMENTlink modified 7.1 years ago by Lee Katz3.0k • written 7.1 years ago by konstantinkul90
3
gravatar for Lee Katz
7.1 years ago by
Lee Katz3.0k
Atlanta, GA
Lee Katz3.0k wrote:

Blast+ comes with a legacy_blast.pl script that you can use. If you do a command such as legacy_blast.pl blastall ... then all your parameters will be equivalent. This should be exactly an answer to your problem.

ADD COMMENTlink written 7.1 years ago by Lee Katz3.0k

Thanks, Lee! You saved me again!

ADD REPLYlink written 7.1 years ago by konstantinkul90

I'm glad I helped you out!

ADD REPLYlink written 7.1 years ago by Lee Katz3.0k
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