I am looking for a free program that can read ABI trace files and allow for end trimming. I have a constantly changing set of ABI files and I want to be able to trim the ends based on the quality of the sequence. This would preferably be a command line program that I can run on Windows or Ubuntu so that I can automate it within my pipeline. I am not looking for a chromatogram view, I want something that can tell me the quality of sequence at each position.
Thank you for your help!