Question: Command Line Program To Trim Abi Files
3
gravatar for Greg
6.9 years ago by
Greg50
Greg50 wrote:

Hello all,

I am looking for a free program that can read ABI trace files and allow for end trimming. I have a constantly changing set of ABI files and I want to be able to trim the ends based on the quality of the sequence. This would preferably be a command line program that I can run on Windows or Ubuntu so that I can automate it within my pipeline. I am not looking for a chromatogram view, I want something that can tell me the quality of sequence at each position.

Thank you for your help!

trimming command-line • 2.3k views
ADD COMMENTlink written 6.9 years ago by Greg50
3
gravatar for Darked89
6.9 years ago by
Darked894.2k
Barcelona, Spain
Darked894.2k wrote:

pregap4 from Staden I believe should have command line interface apart from GUI.

ADD COMMENTlink written 6.9 years ago by Darked894.2k
3
gravatar for Lee Katz
6.9 years ago by
Lee Katz3.0k
Atlanta, GA
Lee Katz3.0k wrote:

phred does this really well, but you need to contact the author to order it. Free for academic users.

ADD COMMENTlink written 6.9 years ago by Lee Katz3.0k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1766 users visited in the last hour