I have found out core genome of 30 bacterial species of same genus. I have unique genes of each species.
I am yet to determine pan genome.
I m going to compare the codon and amino acid usage, protein function annotations etc. for different sets of genes.
Will comparing these parameters for 'Core genome set' with 'set of Combined Unique genomes ' provide any useful information?
Should I compare core genome with pan genome and accessory genome as well?
Suggestions please. Thanks in advance.