Question: Artemis, Is It Possible To Compare Genomes Gbk Vs Fasta Format?
1
gravatar for pilarel
6.5 years ago by
pilarel10
pilarel10 wrote:

It might be a simple question, but I have been trying to do it and cant find the way to do it, However I thought since artemis is so well known it should be possible to do such a simple task.

I would like to know if Artemis can compare two files... one would be GBK (genebank file) and the other one is a fasta file with a sequence.

I am using Biolinux tools (includes Artemis)... is there any tool in this package where i can do this? I just need to visualize the location (whcih genes) of some mutations that are in the fasta file.

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ADD COMMENTlink modified 5.7 years ago by Biostar ♦♦ 20 • written 6.5 years ago by pilarel10
0
gravatar for bioinfo
6.5 years ago by
bioinfo690
EU
bioinfo690 wrote:

I guess Artemis can't visualise the mutations by using the fasta files. You need a variant file in vcf or bcf format instead. Then that file need to be compressed and indexed before uploading in Artemis.

ADD COMMENTlink written 6.5 years ago by bioinfo690
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