Question: Overlaying Data On Molecular Signaling Pathway Visualizations.
gravatar for woemler
7.5 years ago by
Boston, MA
woemler150 wrote:

I have a large variety of genomic data. I'd like to be able to overlay my data from various sources onto molecular signaling pathway diagrams (metabolic and disease) and be able to visualize mutations, CNV and expression levels. Does anybody know of any software (preferably open-source, but licensed is ok) that can accomplish this?

pathway software sequencing • 1.7k views
ADD COMMENTlink modified 6.2 years ago by Biostar ♦♦ 20 • written 7.5 years ago by woemler150
gravatar for Sean Davis
7.5 years ago by
Sean Davis26k
National Institutes of Health, Bethesda, MD
Sean Davis26k wrote:

You might look into using Cytoscape. If you are an R user, you could use RCytoscape to control things from R.

ADD COMMENTlink written 7.5 years ago by Sean Davis26k

This looks perfect! Thanks!

ADD REPLYlink written 7.5 years ago by woemler150
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