I'm trying to use a method for finding poorly aligned sequences. I found this question: Automagically remove “badly” aligning sequence from Multiple-Sequence Alignment. Which led me to the NorMD paper which supposedly has code at ftp://ftp-igbmc.u-strasbg.fr/pub/NORMD/ ... The paper is still being cited as recently as 2010 so someone still has to have the code around somewhere.
I haven't been able to find their code. Does anyone have any suggestions ... besides re-coding it myself.