Question: How Can I Draw A Rod In Pymol?
gravatar for yotama9
7.0 years ago by
yotama90 wrote:

I have a 3d system I visualize in pymol. I'm using the simple xyz file format where I give pymol the name of the molecule and it's x,y,z coordinates.

name    x    y    z

I now want to draw some rods the rods connect two points, one on the y=0 plain and the other on the y=L plain. L is the size of my system in the y direction. How can I achieve this?

Note that I control the input file I give to pymol and I can add points to the file.


pymol • 2.1k views
ADD COMMENTlink modified 6.9 years ago by Vladimir Chupakhin520 • written 7.0 years ago by yotama90

CrossPost: please include this info in future.

ADD REPLYlink written 7.0 years ago by Sukhdeep Singh9.9k

Hey, did you figure this out?

ADD REPLYlink written 4 weeks ago by becko0
gravatar for Vladimir Chupakhin
6.9 years ago by
Toledo, Spain
Vladimir Chupakhin520 wrote:

Ctrl-shift left click on the first atom Ctrl-shift right click on the second atom Then control-T to bond (tie) them together. (from google search actually) or

you may use distance command

ADD COMMENTlink written 6.9 years ago by Vladimir Chupakhin520

This is not what I need. For two reasons: 1. I can't control the radius of the line. 2: The number that appear.

ADD REPLYlink written 6.9 years ago by yotama90
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