Greetings BioStars,
I'm having difficulty testing out a new to me de novo assembler called SHORTY (http://www.cs.sunysb.edu/~skiena/shorty/). My problem is that during the build I get the following error message. Apparently, header.h is trying to load a library called hashmap, but hashmap is not present and hash_map is not a standard C++ library. I'm not sure where it's supposed to come from. I have emailed the developers for assistance last week; however, I received no reply. Can you offer advice on how to solve this problem? Thanks!
[jturner8@bloom shorty-2.0]$ ls build conf doc README scripts src tmp tools utils [jturner8@bloom shorty-2.0]$ ./build conf/ab-strict bin/shorty-assembler copying conf/ab-strict to src/macros.h making bin/shorty-assembler g++ -g -Wno-deprecated -c assembler.cc -o ../obj/assembler.o In file included from assembler.h:4, from assembler.cc:5: header.h:15:20: error: hash_map: No such file or directory make: * [assembler.o] Error 1 building finished
