How To Identify The Protein Domains Of A Specific Protein?
3
5
Entering edit mode
9.7 years ago
Omid ▴ 580

Hi How can I find which kind of protein domains exist in my protein and have a good image as out put?I mean, have a picture which shows domains in a specific protein?Thanks

protein • 15k views
ADD COMMENT
6
Entering edit mode
9.7 years ago
KCC ★ 4.0k

I've used: SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/

CATH: http://www.cathdb.info/

Interpro: http://www.ebi.ac.uk/interpro/

SMART: http://smart.embl-heidelberg.de/

I remember finding SMART the prettiest.

ADD COMMENT
6
Entering edit mode
9.7 years ago

Expasy have a cool tool for creating the domain diagrams: http://prosite.expasy.org/mydomains/ Perhaps after getting the data from http://pfam.sanger.ac.uk

ADD COMMENT
0
Entering edit mode

Is there any tutorial to use pfam + prosite together?

ADD REPLY
3
Entering edit mode
9.7 years ago
Pavel Senin ★ 1.9k

NCBI Search for Conserved Domains will do the job: http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

ADD COMMENT

Login before adding your answer.

Traffic: 1203 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6