How do I do liftover from the worm genomes ce6 to ce10? I want to lift a whole wiggle or bedgraph file, not just a bed or gff3 file.
I will settle for any information on what sections map to which other sections on a genomic level. I can write the translation program myself if needed.
EDIT: Would it work to just make a bed file with each nucleotide listed like this:
chr 0 1 ... chr 1 2 ... chr 2 3 ...
and so on ... and run the standard liftOver program on that?
Thanks, this was what I needed. Just completed the parser.