Question: Combined Rnaseq + Microarray Transcriptomics Datasets
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gravatar for rmflight
7.2 years ago by
rmflight80
United States
rmflight80 wrote:

I am working on some novel microarray analysis methods, and I am looking for some transcriptomics data where there exists both DNA microarray (raw CEL files from Affy preferably) data and RNASeq data (any platform, raw) for the same or very similar biological system. Mouse or human data would be best.

I have done some searching in the SRA and GEO, and on BioProjects, but mostly what I find are microarray combined with ChIP-Seq, not transcriptomics in both cases.

ADD COMMENTlink modified 7.2 years ago by JC9.5k • written 7.2 years ago by rmflight80
1
gravatar for JC
7.2 years ago by
JC9.5k
Mexico
JC9.5k wrote:

just look for papers where microarray are compared to RNAseq such as:

  1. http://www.nature.com/ng/journal/v42/n12/full/ng.711.html
  2. http://www.biomedcentral.com/1471-2164/10/161
  3. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017820
  4. http://w14.biomedcentral.com/1471-2164/11/282
  5. http://w13.biomedcentral.com/1471-2164/11/383/

I found those using Google Scholar for "Microarray RNAseq comparison"

ADD COMMENTlink modified 7.2 years ago • written 7.2 years ago by JC9.5k
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