Question: How To Get An Annotation File That Annotates All The Go Terms In A Different File
0
gravatar for zitona_tracker
6.3 years ago by
zitona_tracker0 wrote:

I downloaded a Full Gene Ontology Term file from the following link: http://www.geneontology.org/GO.downloads.ontology.shtml

The file that i downloaded is the one in the first row. It has around 30,000 GO Terms. My question is: Where can I find another file that has the gene annotations of all the GO Terms in the first file?

gene annotation gene-ontology • 2.2k views
ADD COMMENTlink modified 6.3 years ago by Khader Shameer18k • written 6.3 years ago by zitona_tracker0

cross posted on SO: http://stackoverflow.com/questions/14040316

ADD REPLYlink written 6.3 years ago by Pierre Lindenbaum119k

and I don't understand your question. What is "the file I downloaded is the one in the first row" ?

ADD REPLYlink written 6.3 years ago by Pierre Lindenbaum119k

If you are looking for GO terms that correspond to gene annotations, then you are going to have to specify what organism you are working with. Not all organisms have pre-generated GO annotations. You will have to use various software (blast2go, interproscan) to generate the GO terms for your gene-set.

ADD REPLYlink modified 6.3 years ago • written 6.3 years ago by Damian Kao15k
0
gravatar for Khader Shameer
6.3 years ago by
Manhattan, NY
Khader Shameer18k wrote:

I think the zitona_tracker is looking for Gene Ontology Annotation files in GAF format. Annotation data is available via GOA-EBI or Gene Ontology annotations repository

ADD COMMENTlink written 6.3 years ago by Khader Shameer18k
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