I am using Java TreeView software for generating some heatmaps. I used Cluster software on my list of 22000 genes and generated .cdt files which are input for Java Treeview
I run this command to open up the interface of treeview software
java -jar -Xmx500m /apps1/treeview/1.1.6r2/TreeView.jar
File ---> Open -->Selecting appropriate .cdt file ----> style as kmeans
Now here's the problem. When i do style as kmeans a heat map is generated. I change the pixels and all so as to view it better and try to save the image by going to Export---> Save Tree Image
But nothing happens. When i use the style as linked i can save the images.
I am not sure but is it because i have around 22000 genes and around 50 columns which is not letting me save the image of the heatmap on the kmeans style.
Hope to find solution here.