Sra Replacement
4
9
Entering edit mode
13.6 years ago
Science_Robot ★ 1.1k

Now that the SRA is getting shut down, how do you plan on sharing your reads?

sra sequencing ncbi • 3.3k views
ADD COMMENT
0
Entering edit mode

This question is no longer relevant since "NCBI will continue to operate the SRA as NIH's primary archive of high-throughput sequencing data": http://www.ncbi.nlm.nih.gov/About/news/13Oct2011.html

ADD REPLY
0
Entering edit mode

Did you read that link before posting it?

They are only continuing to host 3 types of data. It is no longer a repository for short reads. They are only hosting: assemblies, epigenomic data, and 16S rRNA amplicons.

ADD REPLY
6
Entering edit mode
13.6 years ago
David L. ▴ 110

The [?]European Nucleotide Archive[?] might be an option.

EMBL-EBI will continue to operate its SRA according to http://www.ebi.ac.uk/ena/SRA_announcement_Feb_2011.pdf .

ADD COMMENT
6
Entering edit mode
ADD COMMENT
5
Entering edit mode
13.6 years ago
Joachim ★ 2.9k

From http://www.ncbi.nlm.nih.gov/sra:

We therefore encourage the research community to continue submissions of these data to the applicable databases, including:

  1. RNA-Seq and epigenomic data to GEO
  2. Variants, genotypes, phased haplotypes, and polymorphisms to dbVar, dbGaP and dbSNP
  3. Genomic assemblies to GenBank/WGS
  4. Transcript assemblies to GenBank/TSA
  5. 16S ribosomal RNA and other targeted
  6. locus survey assemblies to GenBank
ADD COMMENT
0
Entering edit mode

None of those things are for reads data except for maybe 16S.

ADD REPLY
0
Entering edit mode

I agree with 'audyyy' SRA now does not have any facility for DNA reads, e.g. ChIP-seq.

ADD REPLY
4
Entering edit mode
13.6 years ago

In time, I believe BioTorrents may seen to be a viable option for hosting raw sequencing data.

ADD COMMENT

Login before adding your answer.

Traffic: 1330 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6