Is There Big Difference Of Using -G Annotation Or Not In Tophat
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11.9 years ago
camelbbs ▴ 710

Hi,

Does anyone try using -G or no -G in tophat mapping. Any effection to the result?

thanks,

Che

tophat • 1.7k views
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Entering edit mode
11.9 years ago
Raygozak ★ 1.4k

I would believe the annotation provides more information about exon boundaries and would help in detecting junctions more accurately.

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