I have 7 genes from 1 sample I am trying to analyze. In the result, the total no. of mutations for every gene is shown as the total no. of genes I have provide in the maf file.
#Gene Indels SNVs Tot Muts MARCH12 0 7 7 JUNE12 0 7 7 ....
Here, for every gene it shows 7 mutations. Is this what it is supposed to give? I think I am going wrong somewhere. I have tried giving different no. of genes. If i give 11 genes in maf file it shows 11 mutations for each and every gene. I understand that the mutation it is showing are the mutations that I have given in the maf file but giving that same no. for every gene is something I am doubtful off. Please help.