Mapping A List Of Proteins To A Protein-Protein Interaction Network Or Pathway Map

Question

[Pappu]

I have a list of possible interacting proteins obtained from mass spectrometry of HeLa cell line by pull down assay.

I want to map these proteins to a known interaction network i.e. STRING or to a pathway. I also want to compare it to the mapping of RNA-Seq and microarray gene expression profile of HeLa cells. Could you give some suggestions?

[Istvan Albert]

This question suffers from being overly broad. I would suggest to get started with the process then ask specific questions on the problems you have.