Tool: Deindexer - A Standalone Demultiplexing Tool For Illumina Platform
gravatar for jingtao09
5.6 years ago by
jingtao09110 wrote:


A Standalone Demultiplexing Tool for Illumina Platform


  1. No need to edit SampleSheet.csv files

  2. Support your own barcode library

  3. Support many mismatches on barcode[s] (Currently Illumina only allows 1 mismatch)

  4. Easy to use:

    support single barcode to dual barcode or multiple barcodes protocol [even it has not exist yet]

  5. Fast: est. 4 million reads per minute

    One hiseq lane dual indexes takes 30 mins

    One non-hiseq lane takes 4 min or less using 400 barcodes.

  6. Grouping output files:

    customize the output layout within the config file

Project location:

illumina tool • 5.3k views
ADD COMMENTlink modified 5.6 years ago • written 5.6 years ago by jingtao09110

Does it accept variable-length barcodes?

ADD REPLYlink written 3.5 years ago by Yannick Wurm2.3k
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