Question: How And Where To Retrieve The Cnv Information From The Breakdancer Results
gravatar for luofei.whu
6.4 years ago by
luofei.whu0 wrote:

Hi everybody As known, breakdancer uses the pair end way to call cnv. Its readme file says that with the CPP version, it's possible to call the copy number variants. However, I only found INS, INV, DEL, ITX, CTX five aberration types in the results. Anybody could tell me where I could find the cnv results information. Thanks in advance.

breakdancer cnv • 1.6k views
ADD COMMENTlink modified 6.4 years ago by Chris Miller21k • written 6.4 years ago by luofei.whu0
gravatar for Chris Miller
6.4 years ago by
Chris Miller21k
Washington University in St. Louis, MO
Chris Miller21k wrote:

Breakdancer doesn't call copy number variants. It calls structural variants. If you see a large deletion in breakdancer, it may be the case that a copy number deletion has occurred. It's also possible that the deleted sequence got re-integrated somewhere else, in which case, there would be no effect on copy number.

ADD COMMENTlink written 6.4 years ago by Chris Miller21k
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