From Where Can One Download Protein Known Clusters?
1
0
Entering edit mode
10.1 years ago
Sirus ▴ 790

Hello every body. I have a Y11K protein-protein interaction network and I have used some methods to cluster it, I want to compare it with some known clusters to see the number of exact matches, could any one point me from where can I download them.

Thanks in advance.

ppi clustering • 1.4k views
ADD COMMENT
0
Entering edit mode

It's not clear what you want to do. Are you interested in topologically similar clusters? Overlaps with other clusters?

ADD REPLY
0
Entering edit mode

I am interested in the overlap with other clusters, I mean with known clusters

ADD REPLY
2
Entering edit mode
10.1 years ago
Spitshine ▴ 640

Conceptually, clusters in protein-protein interaction networks, particular of physical interactions, are protein complexes.

For yeast data, you can find a good dataset starting in this paper from the Wodak group.

The reference for human data is probably HPRD these days.

ADD COMMENT
0
Entering edit mode

Are there other sources?

ADD REPLY
0
Entering edit mode

What do you mean, other sources? Different organisms, experimental information, other reference data sets, reference methods for clustering (MCL)?

ADD REPLY
0
Entering edit mode

Yeah, I mean other organizmes data sets and may be other Yeast complexes resources.

ADD REPLY

Login before adding your answer.

Traffic: 1763 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6