Question: How To Learn About Next Generation Gene Sequencing
3
gravatar for Medhat
6.1 years ago by
Medhat8.2k
Texas
Medhat8.2k wrote:

Sorry if my question is naive but i want to learn about next generation gene sequencing how to deal with the data output, as most posts about jobs demands "Ability to manage and analyze large biological data sets coming from next generation sequencing" so if you please can any one support me with any online resource , books that i can access to learn about this topic also a source of data to analyze and learn from it, there is a post here in Biostar showing some paper related to the topic can be found here Sequencing Technology Review Papers as there is more? books tutorial etc...

i found also this Wiki Next Generation Sequencing

Resources for learning how to deal with next generation sequence?

your answer is highly appreciated

tutorial sequencing • 5.5k views
ADD COMMENTlink modified 4.2 years ago by Malachi Griffith17k • written 6.1 years ago by Medhat8.2k
3

Already asked -> From where to Start next-gen-sequencing?

ADD REPLYlink modified 6.1 years ago by Istvan Albert ♦♦ 79k • written 6.1 years ago by Thaman3.2k

thanks a lot very helpful

ADD REPLYlink written 6.1 years ago by Medhat8.2k
3
gravatar for samsara
6.1 years ago by
samsara570
The Earth
samsara570 wrote:

This might be really helpful for you. http://www.csc.fi/english/csc/courses/archive/ngs_workshop. This is ngs workshop, but there you can find slides and datasets, which might be helpful.

ADD COMMENTlink modified 6.1 years ago • written 6.1 years ago by samsara570
3
gravatar for mknut
6.1 years ago by
mknut90
mknut90 wrote:

Relatively up-to-date book:

Bioinformatics for High Throughput Sequencing

Rodríguez-Ezpeleta, Naiara; Hackenberg, Michael; Aransay, Ana M

http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-4614-0781-2

ADD COMMENTlink written 6.1 years ago by mknut90
1

do you know any source for data to train on it?

ADD REPLYlink written 6.1 years ago by Medhat8.2k
3

http://www.ncbi.nlm.nih.gov/Traces/sra/ They use .sra format, which you will have to convert to FASTQ using sra toolkit. Explanation - http://www.ncbi.nlm.nih.gov/books/NBK56562/

ADD REPLYlink written 6.1 years ago by mknut90

thanks man you diverse another point :)

ADD REPLYlink written 6.1 years ago by Medhat8.2k
2
gravatar for Emily_Ensembl
5.9 years ago by
Emily_Ensembl17k
EMBL-EBI
Emily_Ensembl17k wrote:

There's a practical course on NGS here, with video lectures and exercises:

http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course

ADD COMMENTlink written 5.9 years ago by Emily_Ensembl17k
1
gravatar for Pals
6.0 years ago by
Pals1.3k
Finland
Pals1.3k wrote:

Online courses from EBI are very useful http://www.ebi.ac.uk/training/online/course-list . You can find a list of bioinformatics-related blogs here http://seqanswers.com/forums/showthread.php?t=5024

ADD COMMENTlink modified 6.0 years ago • written 6.0 years ago by Pals1.3k
0
gravatar for Malachi Griffith
4.2 years ago by
Washington University School of Medicine, St. Louis, USA
Malachi Griffith17k wrote:

Here is a video lecture series that is quite popular: Current Topics in Genome Analysis 2014 (collection of educational lectures)

Current Topics in Genome Analysis 2014 (collection of educational lectures)

ADD COMMENTlink written 4.2 years ago by Malachi Griffith17k
0
gravatar for Malachi Griffith
4.2 years ago by
Washington University School of Medicine, St. Louis, USA
Malachi Griffith17k wrote:

Here are some threads with good lists of workshops that you might consider signing up for:

Where To Look For Quality Bioinformatics Short Courses And Workshops?

and

Links To Good Next Gen Sequence Analysis Training Courses And Centres.

And another relevant post:

Web Based Interactive Resources To Learn Programming And/Or Bioinformatics

 

 

ADD COMMENTlink written 4.2 years ago by Malachi Griffith17k
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