I have a set of genomic coordinates and genomic sequence changes (i.e g.Agenomicposition_C ). I need to find in which transcripts and what corresponding amino acid changes will occur as a result of this genomic sequence variation from the reference.
Can you please direct me to the right resource. I would generally like to use UCSC tables, pythoin/biopython for this and it should be a standalone solution as opposed to going to a web site/service etc.
A link to a protocol, tutorial or even a chapter from a bioinformatics book that covers this subject for future reference would also be very much appreciated. Sorry for the basic question but I don't have any other bioinformaticians around me so you guys are my first step.